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 | Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
28/07/2023 |
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Actualizado : |
28/07/2023 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
RODRÍGUEZ, J.D.; PERIPOLLI, E.; LONDOÑO-GIL, M.; ESPIGOLAN, R.; LÔBO, R. B.; LÓPEZ-CORREA, R.; AGUILAR, I.; BALDI, F. |
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Afiliación : |
JUAN DIEGO RODRÍGUEZ, Faculdade de Ciências Agrarias e Veterinárias, Departamento de Zootecnia, Universidade Estadual Paulista (Unesp), Jaboticabal, 14884-900, Brazil.; ELISA PERIPOLLI, Faculdade de Ciências Agrarias e Veterinárias, Departamento de Zootecnia, Universidade Estadual Paulista (Unesp), Jaboticabal, 14884-900, Brazil; MARISOL LONDOÑO-GIL, Faculdade de Ciências Agrarias e Veterinárias, Departamento de Zootecnia, Universidade Estadual Paulista (Unesp), Jaboticabal, 14884-900, Brazil; RAFAEL ESPIGOLAN, Faculdade de Zootecnia e Engenharia de Alimentos, Departamento de Medicina Veterinária, Universidade de São Paulo (Usp), Pirassununga, 13535-900, Brazil.; RAYSILDO BARBOSA LÔBO, Associação Nacional de Criadores e Pesquisadores, Ribeirão Preto, Brazil; RODRIGO LÓPEZ-CORREA, Facultad de Veterinaria, Departamento de Genética y Mejoramiento Animal, Universidad de la República, Montevideo, Uruguay; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FERNANDO BALDI, Faculdade de Ciências Agrarias e Veterinárias, Departamento de Zootecnia, Universidade Estadual Paulista (Unesp), Jaboticabal, 14884-900, Brazil. |
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Título : |
Effect of minor allele frequency and density of single nucleotide polymorphism marker arrays on imputation performance and prediction ability using the single-step genomic Best Linear Unbiased Prediction in a simulated beef cattle population. |
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Complemento del título : |
Research paper. |
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Fecha de publicación : |
2023 |
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Fuente / Imprenta : |
Animal Production Science. 2023, volume 63, issue 9, p. 844-852. https://doi.org/10.1071/AN21581 |
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ISSN : |
1836-0939; eISSN: 1836-5787. |
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DOI : |
10.1071/AN21581 |
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Idioma : |
Inglés |
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Notas : |
Article history: Submitted 1 December 2021, Accepted 1 March 2023, Published 4 April 2023. -- Correspondence to: Juan Diego Rodríguez,
Universidade Estadual Paulista (Unesp), Faculdade de Ciências Agrarias e Veterinárias, Departamento de Zootecnia, Jaboticabal, 14884-900, Brazil. Email: juan.diego@unesp.br -- Handling Editor: Kim Bunter. -- |
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Contenido : |
Context: In beef cattle populations, there is little evidence regarding the minimum number of genetic markers needed to obtain reliable genomic prediction and imputed genotypes.
Aims: This study aimed to evaluate the impact of single nucleotide polymorphism (SNP) marker density and minor allele frequency (MAF), on genomic predictions and imputation performance for high and low heritability traits using the single-step genomic Best Linear Unbiased Prediction methodology (ssGBLUP) in a simulated beef cattle population.
© 2023 The Author(s) (or their employer(s)). Published by CSIRO Publishing |
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Palabras claves : |
Bias; Bovine; Customised SNP arrays; Genomic selection; Imputation accuracy; Inflation; MAF; Simulation. |
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Asunto categoría : |
L10 Genética y mejoramiento animal |
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Marc : |
LEADER 02068naa a2200337 a 4500
001 1064277
005 2023-07-28
008 2023 bl uuuu u00u1 u #d
022 $a1836-0939; eISSN: 1836-5787.
024 7 $a10.1071/AN21581$2DOI
100 1 $aRODRÍGUEZ, J.D.
245 $aEffect of minor allele frequency and density of single nucleotide polymorphism marker arrays on imputation performance and prediction ability using the single-step genomic Best Linear Unbiased Prediction in a simulated beef cattle population.$h[electronic resource]
260 $c2023
500 $aArticle history: Submitted 1 December 2021, Accepted 1 March 2023, Published 4 April 2023. -- Correspondence to: Juan Diego Rodríguez, Universidade Estadual Paulista (Unesp), Faculdade de Ciências Agrarias e Veterinárias, Departamento de Zootecnia, Jaboticabal, 14884-900, Brazil. Email: juan.diego@unesp.br -- Handling Editor: Kim Bunter. --
520 $aContext: In beef cattle populations, there is little evidence regarding the minimum number of genetic markers needed to obtain reliable genomic prediction and imputed genotypes. Aims: This study aimed to evaluate the impact of single nucleotide polymorphism (SNP) marker density and minor allele frequency (MAF), on genomic predictions and imputation performance for high and low heritability traits using the single-step genomic Best Linear Unbiased Prediction methodology (ssGBLUP) in a simulated beef cattle population. © 2023 The Author(s) (or their employer(s)). Published by CSIRO Publishing
653 $aBias
653 $aBovine
653 $aCustomised SNP arrays
653 $aGenomic selection
653 $aImputation accuracy
653 $aInflation
653 $aMAF
653 $aSimulation
700 1 $aPERIPOLLI, E.
700 1 $aLONDOÑO-GIL, M.
700 1 $aESPIGOLAN, R.
700 1 $aLÔBO, R. B.
700 1 $aLÓPEZ-CORREA, R.
700 1 $aAGUILAR, I.
700 1 $aBALDI, F.
773 $tAnimal Production Science. 2023, volume 63, issue 9, p. 844-852. https://doi.org/10.1071/AN21581
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha actual : |
22/11/2021 |
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Actualizado : |
22/11/2021 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Circulación / Nivel : |
Internacional - -- |
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Autor : |
SCHILD, C.; BOABAID, F.; MACHADO, M.; SARAVIA, A.; OLIVEIRA, L.G.S.; DIAZ, S.; VILDOZA, A. L.; MARTÍNEZ, A.; MARTÍNEZ, R.; BARROS, S.S.; RIET-CORREA, F. |
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Afiliación : |
CARLOS SCHILD, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; FABIANA BOABAID, Polo de Desarrollo Universitario, Departamento de Patología, Facultad de Medicina Veterinaria, Universidad de la República, Tacuarembó, Uruguay; MIZAEL MACHADO DA COSTA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; ANDERSON SARAVIA DE MELO, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; LUIZ GUSTAVO SCHNEIDER DE OLIVEIRA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay.; SAULO SEBASTIAN DIAZ OLIVERA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; ANA LAURA VILDOZA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; AGUSTÍN MARTÍNEZ, Veterinario de Libre Ejercicio, Tacuarembó, Uruguay; RAFAEL MARTÍNEZ, Veterinario de Libre Ejercicio, Tacuarembó, Uruguay; SEVERO S. BARROS, Laboratorio de Patologia Veterinaria, Universidade Federal de Santa Maria, Santa Maria, Rio Grande do Sul, Brazil; FRANKLIN RIET-CORREA AMARAL, Programa de Posgraduação Em Ciencia Animal Nos Trópicos, Escola de Medicina Veterinária e Zootecnia, Universidade Federal da Bahia, Salvador, Brazil. |
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Título : |
Nierembergia rivularis poisoning in cattle. |
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Fecha de publicación : |
2021 |
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Fuente / Imprenta : |
Toxicon, December 2021, Volume 204, Pages 21- 30. doi: https://doi.org/10.1016/j.toxicon.2021.10.009 |
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ISSN : |
0041-0101 |
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DOI : |
10.1016/j.toxicon.2021.10.009 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received 16 August 2021; Received in revised form 19 October 2021; Accepted 20 October 2021; Available online 26 October 2021.
Corresponding authors: Riet-Correa, F.; Programa de Posgraduação Em Ciencia Animal Nos Trópicos, Escola de Medicina Veterinária e Zootecnia, Universidade Federal da Bahia, Salvador, Brazil; email:franklinrietcorrea@gmail.com
Schild, C.O.; Instituto Nacional de Investigación Agropecuaria (INIA), Plataforma de Investigación en Salud Animal (PSA), Estación Experimental (EE) Tacuarembó, Ruta 5, km 386, Tacuarembó, Uruguay; email:cschild@inia.org.uy |
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Contenido : |
ABSTRACT. - Nierembergia rivularis causes enzootic calcinosis (EC) in sheep. In this work, we describe EC caused by N. rivularis in cattle. For 3 years cattle grazing in 7 paddocks were evaluated. Cows with clinical signs compatible with EC were detected in only one paddock with a morbidity of 9.4%, 24.5%, and 34.5% during the summer of 2019, 2020, and 2021, respectively. Affected cows weighed 55 kg less (p < 0.01) than cows without signs of the same paddock, and 19.6% of these cows had hypercalcemia and/or hyperphosphatemia. Typical soft tissue calcification was observed in 3 autopsied cows. Additionally to the arterial calcification, 2 cows had multiple mineralized foci in several veins. In the Paddock A where EC occurred, the pasture contained 7?12% N. rivularis. In the other 6 paddocks (Paddocks B-G) where EC had not occurred, the pasture had 0.2?3.5% N. rivularis. Cows grazing in Paddock A had ∼30% lower pregnancy rates than cows from Paddocks B-G. At the slaughterhouse, the carcasses of 45 cows from Paddock A weighed 17.6% (p < 0.01) less than 93 carcasses of cows from Paddocks B-G. Furthermore, the carcasses of cows from Paddock A were classified as low quality. Eight cows with EC signs from Paddock A and 10 cows without EC signs from Paddocks B-G were removed to a Lolium multiflorum pasture. After 120 days of grazing, the cows from Paddock A gained 45.2% less (p < 0.01) live weight than cows from Paddocks B-G. Poisoning with N. rivularis may cause significant economic losses in Uruguay due to low fertility rates and weight gain of affected cattle. © 2021 Elsevier Ltd MenosABSTRACT. - Nierembergia rivularis causes enzootic calcinosis (EC) in sheep. In this work, we describe EC caused by N. rivularis in cattle. For 3 years cattle grazing in 7 paddocks were evaluated. Cows with clinical signs compatible with EC were detected in only one paddock with a morbidity of 9.4%, 24.5%, and 34.5% during the summer of 2019, 2020, and 2021, respectively. Affected cows weighed 55 kg less (p < 0.01) than cows without signs of the same paddock, and 19.6% of these cows had hypercalcemia and/or hyperphosphatemia. Typical soft tissue calcification was observed in 3 autopsied cows. Additionally to the arterial calcification, 2 cows had multiple mineralized foci in several veins. In the Paddock A where EC occurred, the pasture contained 7?12% N. rivularis. In the other 6 paddocks (Paddocks B-G) where EC had not occurred, the pasture had 0.2?3.5% N. rivularis. Cows grazing in Paddock A had ∼30% lower pregnancy rates than cows from Paddocks B-G. At the slaughterhouse, the carcasses of 45 cows from Paddock A weighed 17.6% (p < 0.01) less than 93 carcasses of cows from Paddocks B-G. Furthermore, the carcasses of cows from Paddock A were classified as low quality. Eight cows with EC signs from Paddock A and 10 cows without EC signs from Paddocks B-G were removed to a Lolium multiflorum pasture. After 120 days of grazing, the cows from Paddock A gained 45.2% less (p < 0.01) live weight than cows from Paddocks B-G. Poisoning with N. rivularis may cause significant e... Presentar Todo |
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Palabras claves : |
Cattle; Enzootic calcinosis; Nierembergia rivularis. |
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Thesagro : |
URUGUAY. |
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Asunto categoría : |
L01 Ganadería |
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Marc : |
LEADER 03107naa a2200325 a 4500
001 1062535
005 2021-11-22
008 2021 bl uuuu u00u1 u #d
022 $a0041-0101
024 7 $a10.1016/j.toxicon.2021.10.009$2DOI
100 1 $aSCHILD, C.
245 $aNierembergia rivularis poisoning in cattle.$h[electronic resource]
260 $c2021
500 $aArticle history: Received 16 August 2021; Received in revised form 19 October 2021; Accepted 20 October 2021; Available online 26 October 2021. Corresponding authors: Riet-Correa, F.; Programa de Posgraduação Em Ciencia Animal Nos Trópicos, Escola de Medicina Veterinária e Zootecnia, Universidade Federal da Bahia, Salvador, Brazil; email:franklinrietcorrea@gmail.com Schild, C.O.; Instituto Nacional de Investigación Agropecuaria (INIA), Plataforma de Investigación en Salud Animal (PSA), Estación Experimental (EE) Tacuarembó, Ruta 5, km 386, Tacuarembó, Uruguay; email:cschild@inia.org.uy
520 $aABSTRACT. - Nierembergia rivularis causes enzootic calcinosis (EC) in sheep. In this work, we describe EC caused by N. rivularis in cattle. For 3 years cattle grazing in 7 paddocks were evaluated. Cows with clinical signs compatible with EC were detected in only one paddock with a morbidity of 9.4%, 24.5%, and 34.5% during the summer of 2019, 2020, and 2021, respectively. Affected cows weighed 55 kg less (p < 0.01) than cows without signs of the same paddock, and 19.6% of these cows had hypercalcemia and/or hyperphosphatemia. Typical soft tissue calcification was observed in 3 autopsied cows. Additionally to the arterial calcification, 2 cows had multiple mineralized foci in several veins. In the Paddock A where EC occurred, the pasture contained 7?12% N. rivularis. In the other 6 paddocks (Paddocks B-G) where EC had not occurred, the pasture had 0.2?3.5% N. rivularis. Cows grazing in Paddock A had ∼30% lower pregnancy rates than cows from Paddocks B-G. At the slaughterhouse, the carcasses of 45 cows from Paddock A weighed 17.6% (p < 0.01) less than 93 carcasses of cows from Paddocks B-G. Furthermore, the carcasses of cows from Paddock A were classified as low quality. Eight cows with EC signs from Paddock A and 10 cows without EC signs from Paddocks B-G were removed to a Lolium multiflorum pasture. After 120 days of grazing, the cows from Paddock A gained 45.2% less (p < 0.01) live weight than cows from Paddocks B-G. Poisoning with N. rivularis may cause significant economic losses in Uruguay due to low fertility rates and weight gain of affected cattle. © 2021 Elsevier Ltd
650 $aURUGUAY
653 $aCattle
653 $aEnzootic calcinosis
653 $aNierembergia rivularis
700 1 $aBOABAID, F.
700 1 $aMACHADO, M.
700 1 $aSARAVIA, A.
700 1 $aOLIVEIRA, L.G.S.
700 1 $aDIAZ, S.
700 1 $aVILDOZA, A. L.
700 1 $aMARTÍNEZ, A.
700 1 $aMARTÍNEZ, R.
700 1 $aBARROS, S.S.
700 1 $aRIET-CORREA, F.
773 $tToxicon, December 2021, Volume 204, Pages 21- 30. doi: https://doi.org/10.1016/j.toxicon.2021.10.009
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